Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5278 | 16057;16058;16059 | chr2:178733461;178733460;178733459 | chr2:179598188;179598187;179598186 |
N2AB | 4961 | 15106;15107;15108 | chr2:178733461;178733460;178733459 | chr2:179598188;179598187;179598186 |
N2A | 4034 | 12325;12326;12327 | chr2:178733461;178733460;178733459 | chr2:179598188;179598187;179598186 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/T | rs754692422 | -0.642 | 1.0 | N | 0.751 | 0.298 | None | gnomAD-2.1.1 | 4.03E-05 | None | None | None | None | N | None | 0 | 1.45096E-04 | None | 0 | 0 | None | 9.81E-05 | None | 0 | 1.78E-05 | 0 |
A/T | rs754692422 | -0.642 | 1.0 | N | 0.751 | 0.298 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
A/T | rs754692422 | -0.642 | 1.0 | N | 0.751 | 0.298 | None | gnomAD-4.0.0 | 1.73522E-05 | None | None | None | None | N | None | 2.66973E-05 | 1.16678E-04 | None | 0 | 2.22866E-05 | None | 0 | 0 | 8.47642E-06 | 8.78426E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.5895 | likely_pathogenic | 0.5874 | pathogenic | -0.783 | Destabilizing | 1.0 | D | 0.748 | deleterious | None | None | None | None | N |
A/D | 0.9533 | likely_pathogenic | 0.9121 | pathogenic | -0.971 | Destabilizing | 1.0 | D | 0.801 | deleterious | D | 0.599432047 | None | None | N |
A/E | 0.9034 | likely_pathogenic | 0.8261 | pathogenic | -0.821 | Destabilizing | 1.0 | D | 0.804 | deleterious | None | None | None | None | N |
A/F | 0.7195 | likely_pathogenic | 0.7049 | pathogenic | -0.481 | Destabilizing | 1.0 | D | 0.805 | deleterious | None | None | None | None | N |
A/G | 0.3187 | likely_benign | 0.3164 | benign | -1.149 | Destabilizing | 1.0 | D | 0.62 | neutral | D | 0.53482684 | None | None | N |
A/H | 0.9417 | likely_pathogenic | 0.9153 | pathogenic | -1.421 | Destabilizing | 1.0 | D | 0.786 | deleterious | None | None | None | None | N |
A/I | 0.3946 | ambiguous | 0.3643 | ambiguous | 0.438 | Stabilizing | 1.0 | D | 0.807 | deleterious | None | None | None | None | N |
A/K | 0.9596 | likely_pathogenic | 0.914 | pathogenic | -0.787 | Destabilizing | 1.0 | D | 0.805 | deleterious | None | None | None | None | N |
A/L | 0.4366 | ambiguous | 0.4138 | ambiguous | 0.438 | Stabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
A/M | 0.4698 | ambiguous | 0.4355 | ambiguous | 0.152 | Stabilizing | 1.0 | D | 0.789 | deleterious | None | None | None | None | N |
A/N | 0.8772 | likely_pathogenic | 0.8265 | pathogenic | -0.877 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
A/P | 0.9733 | likely_pathogenic | 0.9724 | pathogenic | 0.103 | Stabilizing | 1.0 | D | 0.801 | deleterious | D | 0.558319616 | None | None | N |
A/Q | 0.866 | likely_pathogenic | 0.8015 | pathogenic | -0.713 | Destabilizing | 1.0 | D | 0.819 | deleterious | None | None | None | None | N |
A/R | 0.9264 | likely_pathogenic | 0.8638 | pathogenic | -0.922 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
A/S | 0.1957 | likely_benign | 0.1886 | benign | -1.4 | Destabilizing | 1.0 | D | 0.635 | neutral | D | 0.544319676 | None | None | N |
A/T | 0.1754 | likely_benign | 0.141 | benign | -1.095 | Destabilizing | 1.0 | D | 0.751 | deleterious | N | 0.475766692 | None | None | N |
A/V | 0.1653 | likely_benign | 0.1487 | benign | 0.103 | Stabilizing | 1.0 | D | 0.702 | prob.neutral | N | 0.412092184 | None | None | N |
A/W | 0.9763 | likely_pathogenic | 0.9696 | pathogenic | -1.06 | Destabilizing | 1.0 | D | 0.781 | deleterious | None | None | None | None | N |
A/Y | 0.9087 | likely_pathogenic | 0.8795 | pathogenic | -0.477 | Destabilizing | 1.0 | D | 0.816 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.